1. Espinal-Enríquez, J., Muñoz-Montero, S., Imaz-Rosshandler, I., Huerta-Verde,
A., Mejía, C., Hernández-Lemus, E. * Genome-wide expression analysis
suggests a crucial role of dysregulation of Matrix Metalloproteinases Pathway
in Undifferentiated Thyroid Carcinoma, BMC Genomics 16, 207, (2015)

2. Hernández-Lemus, E.*, Tovar, H., Mejía, C., Non-equilibrium thermodynamics
analysis of transcriptional regulation kinetics, Journal of Non-equilibrium thermodynamics 39, 4, (2014)

3. Nicasio-Collazo, L.A., Delgado-González, A., Castañeda-Priego, R.,
Hernández-Lemus, E.*, Stress-induced DNA denaturation in genes associated
with diffuse large B-cell lymphoma, Journal of the Royal Society - Interface
11, 100: 20140785, (2014)

4. Hernández-Lemus, E., Systems Biology and Integrative Omics in Breast Cancer,
en Omics Approaches in Breast Cancer: Towards Next-generation
Diagnosis, Prognosis, and Therapy, Barh, D. (ed.), Springer (2014)

5. Hernández-Lemus, E., Gene Chips: Entre lo Bio, lo Nano y la Salud Humana,
Materiales Avanzados 1 Nueva Época, 1, 39-46, (2014)

6. Siqueiros-García, J.M., Hernández-Lemus, E., García-Herrera, R., Robina-
Galatas, A. Mapping the structure and dynamics of Genomics-related MeSH
terms Complex Networks, PLoS ONE 9(4): e92639 (2014)

7. Hernández-Lemus, E., Data integration, systems approach and multilevel description of complex biosystems, Journal of Physics: Conference Series 475, 1, 012006 (2013).

8. Hernández-Lemus, E., Computational Pharmacogenomics, en Omics for Personalized Medicine, Barh, D., Dhawan, D., Ganguly, N.K. (ed.), Springer (2013)

9. Hernández-Lemus, E., Further steps towards functional systems biology of
cancer, Frontiers in Physiology (Frontiers in Systems Biology), 4, 256, (2013)

10. Hernández-Lemus, E., Gutiérrez, A. G., Vázquez-Aguirre, A., Palma-Tirado,
M.L., Ruíz-Azuara, L., Mejía, M.C., Analysis of Apoptotic and Autophagic Pathways
in Neuroblastoma by Treatment with Copper Compounds in Shimada,
H. (ed.) Neuroblastoma, InTech Open Publishing (2013)

11. Gutiérrez, A.G., Vázquez-Aguirre, A., García-Ramos, J.C., Flores-Alamo, M.,
Hernández-Lemus, E., Ruiz-Azuara, L., Mejía, C., Copper (II) mixed chelate
compounds induce apoptosis through reactive oxygen species in neuroblastoma
cell line CHP-212, Journal of Inorganic Biochemistry (2013)

12. Hernández-Lemus, E., Siqueiros-García, J.M., Information theoretical methods
for complex network structure reconstruction, Complex Adaptive Systems
Modeling 1, 8, (2013)

13. Valencia-Cruz, A.I., Uribe-Figueroa, L., Galindo-Murillo, R., Baca-López, K.,
Gutiérrez, A.G., Vázquez-Aguirre, A., Ruíz-Azuara, L., Hernández-Lemus, E.*,
Mejía, C. *, Whole Genome Gene Expression Analysis reveals Casiopeína-induced
apoptosis pathways, PLoS ONE 8(1): e54664. doi:10.1371/journal.pone.0054664
(2013)

14. Martínez-García, M., Hernández-Lemus, E.*, Health systems as complex systems,
American Journal of Operations Research, 3, 113-126, (2013)

15. Hernández-Lemus, E., Mejía, C., Inference and analysis of apoptotic pathways
in Papillary Thyroid Cancer, en Kreuger, E., Trommler, B. (eds.) Thyroid Cancer:
Diagnosis, Treatment and Prognosis, Nova

16. De Miguel, F.F., Santamaría-Holek, I., Noguez, P., Bustos, C., Hernández-Lemus, E.,
Rubí, J.M., Biophysics of active vesicle transport, an intermediate step that
couples excitation and exocytosis of serotonin in the neuronal soma, PLoS
ONE 7, 10, e45454, (2012)

17. Baca-López, K., Hidalgo-Miranda, A., Mayorga, M., Gutiérrez-Nájera, N.,
Hernández-Lemus, E.*, The role of master regulators in the metabolic
/ transcriptional coupling in breast carcinomas, PLoS ONE 7, 8, e42678, (2012)

18. Hernández-Lemus, E.*, Non-equilibrium thermodynamics of cell signaling,
Journal of Thermodynamics e432143, 1-10, (2012)

19. Hernández-Lemus, E.*, Transcriptional network structure assessment via the
Data Processing Inequality , International Journal of Biophysics 2, 2, 18-
25,(2012)

20. Hernández-Lemus, E.*, Extrasynaptic release of serotonin affects the social
dynamics of leeches, Frontiers in Physiology 3, 158 (2012)

21. Hernández-Lemus, E.*, Retos y oportunidades en la Física Biológica Contemporánea, Revista Digital Universitaria 13, 4, (2012)

22. Hernández-Lemus, E. *, Baca-López, K., Bursting and synchronization in gene
regulatory dynamics, Revista Mexicana de Física S 58, 1, 63-68 (2012)

23. Hernández-Lemus, E. *, Nicasio-Collazo, L. A., Castañeda-Priego, R.*,
Hysteresis in pressure-driven DNA denaturation, PLoS ONE 7, 4, e33789 (2012)

24. Lohr, J., Stojanov, P., Lawrence, M.S., Auclair, D., Chapuy, B., Carter, S., Sougnez,
C., Cruz-Gordillo, P., Knoechel, ,Asmann, Y.W., Slager, S.L., Novak, A.J.,
Dogan, A., Ansell, S.M., Link, B.K., Zou, L., Gould, J., Saksena, G., Stransky,
N., Rangel-Escareño, C., Fernández-López, J.C., Hidalgo-Miranda, A., Meléndez-
Zajgla, J., Hernández-Lemus, E., Schwartz, A., Imaz, I., Ojesina, A., Jung,
J., Pedamallu, C., Lander, E.S., Habermann, T.M., Cerhan, J.R., Shipp, M.A.,
Getz, G., Golub, T.R., Discovery and Prioritization of Somatic Mutations in
DLBCL by Whole Exome Sequencing, Proceedings of the National Academy
of Sciences 109, 10, 3879-3884, (2012)

25. Hernández-Lemus, E. *, Acoplamientos no-lineales entre metabolismo y regulación transcripcional: Un enfoque de Termodinámica Irreversible, en Cincuenta
años de Física estadística en México, Del Río-Correa, J.L., García-Colín,
L.S. (eds.), El Colegio Nacional (2011) pp.313-332

26. Hernández-Lemus, E.*, Rangel-Escareño, C., The role of information theory in
gene regulatory network inference en Information Theory: New Research,
Pierre Deloumeaux, Jose D. Gorzalka (Ed.), Mathematics Research Developments
Series, Nova Publishing (2011)

27. Baca-López, K, Correa-Rodríguez, MD, Flores-Espinosa, R, Garcia-Herrera,
R, Hernández-Armenta CI,Hidalgo-Miranda A, Huerta-Verde, AJ, Imaz-Rosshandler,
I, Martínez-Rubio, AV, Medina-Escareno, A,Mendoza-Smith, R, Rodriguez-Dorantes,
M, Salido-Guadarrama, I, Hernández-Lemus, E*, Rangel-Escareño, C*, A threestate
model for multidimensional genomic data integration, Systems Biomedicine 2,8, (2014)

28. Hernández-Lemus, E.*, On the Application of Compressive Sampling Techniques
to High Throughput Data in Computational Genomics, Theoretical and
Applied Informatics 23, 3-4, 177-192, (2011)

29. Rodríguez, E. E., Hernández-Lemus, E. *, Itzá-Ortíz, B. A., Jiménez, I., Rudomín,
P.*, Multichannel detrended fluctuations analysis reveals synchronized
patterns of spontaneous spinal activity in anesthetized cats, PLoS ONE 6, 10,
e26449, (2011)

30. Hernández-Lemus, E.*, Correa-Rodríguez, M.D., Non-equilibrium hyperbolic transport in transcriptional regulation, PLoS ONE 6, 7, e21558 (2011)

31. Hernández-Lemus, E., Biological Physics in Mexico: Review and New Challenges,
Journal of Biological Physics 37, 2, 167-184, (2011)

32. Jiménez-Sánchez, G, Hernández-Lemus, E.*, Hidalgo-Miranda, A. La variabilidad
Genómica y sus implicaciones en el cuidado de la salud en Introducción
a la Física Biológica, García-Colín, L.S., Dagdug, L., (eds.), El Colegio Nacional,
(2010)

33. Hernández-Lemus, E., Non-equilibrium thermodynamics of transcriptional
bursts, en New Trends in Statistical Physics: Festschrift in honor of Leopoldo
García-Colín’s 80 th Birthday, Macías, A., Dagdug, L. (eds.), World
Scientific, (2010).

34. Hernández-Lemus, E., Extended Irreversible Thermodynamics of Gene Regulation, Journal of Non-Newtonian Fluid Mechanics, 165, 1029-1032, (2010)

35. Baca-López, K., Hernández-Lemus, E., Mayorga, M.,
Física biológica y regulación transcripcional en cáncer, Editorial Académica
Española LAP - Lambert Academic Publishing GmbH & Co. KG, No. 10809,
ISBN: 978-3-659-00492-6 (2012)

36. Nicasio-Collazo, L.A., Castañeda-Priego, R., Hernández-Lemus, E.,
Daño al ADN por estrés, Editorial Académica Española LAP - Lambert Academic
Publishing GmbH & Co. KG, No. 10809, ISBN: 978-3-659-01480-2 (2013)

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